Title |
eXframe: reusable framework for storage, analysis and visualization of genomics experiments
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Published in |
BMC Bioinformatics, November 2011
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DOI | 10.1186/1471-2105-12-452 |
Pubmed ID | |
Authors |
Amit U Sinha, Emily Merrill, Scott A Armstrong, Tim W Clark, Sudeshna Das |
Abstract |
Genome-wide experiments are routinely conducted to measure gene expression, DNA-protein interactions and epigenetic status. Structured metadata for these experiments is imperative for a complete understanding of experimental conditions, to enable consistent data processing and to allow retrieval, comparison, and integration of experimental results. Even though several repositories have been developed for genomics data, only a few provide annotation of samples and assays using controlled vocabularies. Moreover, many of them are tailored for a single type of technology or measurement and do not support the integration of multiple data types. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
Germany | 1 | 33% |
United States | 1 | 33% |
Unknown | 1 | 33% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Scientists | 2 | 67% |
Members of the public | 1 | 33% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 5 | 7% |
United Kingdom | 2 | 3% |
Netherlands | 2 | 3% |
Bangladesh | 1 | 1% |
Brazil | 1 | 1% |
Sweden | 1 | 1% |
Germany | 1 | 1% |
Switzerland | 1 | 1% |
India | 1 | 1% |
Other | 2 | 3% |
Unknown | 50 | 75% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 20 | 30% |
Student > Ph. D. Student | 9 | 13% |
Student > Bachelor | 7 | 10% |
Professor > Associate Professor | 6 | 9% |
Student > Master | 6 | 9% |
Other | 12 | 18% |
Unknown | 7 | 10% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 22 | 33% |
Computer Science | 11 | 16% |
Medicine and Dentistry | 9 | 13% |
Biochemistry, Genetics and Molecular Biology | 5 | 7% |
Nursing and Health Professions | 3 | 4% |
Other | 10 | 15% |
Unknown | 7 | 10% |