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Genetic association analysis of miRNA SNPs implicates MIR145 in breast cancer susceptibility

Overview of attention for article published in BMC Medical Genomics, November 2015
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About this Attention Score

  • Good Attention Score compared to outputs of the same age (76th percentile)
  • Good Attention Score compared to outputs of the same age and source (79th percentile)

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Title
Genetic association analysis of miRNA SNPs implicates MIR145 in breast cancer susceptibility
Published in
BMC Medical Genomics, November 2015
DOI 10.1186/s12881-015-0248-0
Pubmed ID
Authors

Diego Chacon-Cortes, Robert A. Smith, Larisa M. Haupt, Rodney A. Lea, Philippa H. Youl, Lyn R. Griffiths

Abstract

MicroRNAs (miRNAs) are important small non-coding RNA molecules that regulate gene expression in cellular processes related to the pathogenesis of cancer. Genetic variation in miRNA genes could impact their synthesis and cellular effects and single nucleotide polymorphisms (SNPs) are one example of genetic variants studied in relation to breast cancer. Studies aimed at identifying miRNA SNPs (miR-SNPs) associated with breast malignancies could lead towards further understanding of the disease and to develop clinical applications for early diagnosis and treatment. We genotyped a panel of 24 miR-SNPs using multiplex PCR and chip-based matrix assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) analysis in two Caucasian breast cancer case control populations (Primary population: 173 cases and 187 controls and secondary population: 679 cases and 301 controls). Association to breast cancer susceptibility was determined using chi-square (X (2) ) and odds ratio (OR) analysis. Statistical analysis showed six miR-SNPs to be non-polymorphic and twelve of our selected miR-SNPs to have no association with breast cancer risk. However, we were able to show association between rs353291 (located in MIR145) and the risk of developing breast cancer in two independent case control cohorts (p = 0.041 and p = 0.023). Our study is the first to report an association between a miR-SNP in MIR145 and breast cancer risk in individuals of Caucasian background. This finding requires further validation through genotyping of larger cohorts or in individuals of different ethnicities to determine the potential significance of this finding as well as studies aimed to determine functional significance.

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X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 48 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Belgium 1 2%
Australia 1 2%
Unknown 46 96%

Demographic breakdown

Readers by professional status Count As %
Student > Master 12 25%
Student > Ph. D. Student 8 17%
Researcher 6 13%
Student > Bachelor 5 10%
Student > Doctoral Student 3 6%
Other 7 15%
Unknown 7 15%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 16 33%
Medicine and Dentistry 8 17%
Agricultural and Biological Sciences 5 10%
Engineering 3 6%
Nursing and Health Professions 1 2%
Other 6 13%
Unknown 9 19%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 6. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 05 July 2018.
All research outputs
#6,572,276
of 25,374,917 outputs
Outputs from BMC Medical Genomics
#437
of 2,444 outputs
Outputs of similar age
#91,968
of 392,671 outputs
Outputs of similar age from BMC Medical Genomics
#11
of 53 outputs
Altmetric has tracked 25,374,917 research outputs across all sources so far. This one has received more attention than most of these and is in the 74th percentile.
So far Altmetric has tracked 2,444 research outputs from this source. They receive a mean Attention Score of 4.4. This one has done well, scoring higher than 82% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 392,671 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 76% of its contemporaries.
We're also able to compare this research output to 53 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 79% of its contemporaries.