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Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation

Overview of attention for article published in BMC Genomics, January 2012
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • Good Attention Score compared to outputs of the same age (79th percentile)
  • High Attention Score compared to outputs of the same age and source (80th percentile)

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Citations

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66 Dimensions

Readers on

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118 Mendeley
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3 CiteULike
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Title
Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation
Published in
BMC Genomics, January 2012
DOI 10.1186/1471-2164-13-14
Pubmed ID
Authors

Jonathan L Klassen, Cameron R Currie

Abstract

Ongoing technological advances in genome sequencing are allowing bacterial genomes to be sequenced at ever-lower cost. However, nearly all of these new techniques concomitantly decrease genome quality, primarily due to the inability of their relatively short read lengths to bridge certain genomic regions, e.g., those containing repeats. Fragmentation of predicted open reading frames (ORFs) is one possible consequence of this decreased quality. In this study we quantify ORF fragmentation in draft microbial genomes and its effect on annotation efficacy, and we propose a solution to ameliorate this problem.

X Demographics

X Demographics

The data shown below were collected from the profiles of 10 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 118 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 4 3%
Brazil 3 3%
Poland 1 <1%
Spain 1 <1%
Unknown 109 92%

Demographic breakdown

Readers by professional status Count As %
Researcher 24 20%
Student > Ph. D. Student 23 19%
Student > Master 15 13%
Student > Bachelor 14 12%
Student > Postgraduate 8 7%
Other 17 14%
Unknown 17 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 60 51%
Biochemistry, Genetics and Molecular Biology 21 18%
Chemistry 4 3%
Immunology and Microbiology 4 3%
Medicine and Dentistry 3 3%
Other 9 8%
Unknown 17 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 6. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 13 December 2017.
All research outputs
#6,238,835
of 25,374,917 outputs
Outputs from BMC Genomics
#2,309
of 11,244 outputs
Outputs of similar age
#50,707
of 248,796 outputs
Outputs of similar age from BMC Genomics
#26
of 131 outputs
Altmetric has tracked 25,374,917 research outputs across all sources so far. Compared to these this one has done well and is in the 75th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 11,244 research outputs from this source. They receive a mean Attention Score of 4.8. This one has done well, scoring higher than 79% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 248,796 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 79% of its contemporaries.
We're also able to compare this research output to 131 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 80% of its contemporaries.