↓ Skip to main content

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

Overview of attention for article published in BMC Plant Biology, January 2012
Altmetric Badge

About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (93rd percentile)
  • High Attention Score compared to outputs of the same age and source (95th percentile)

Mentioned by

blogs
2 blogs
twitter
4 X users

Citations

dimensions_citation
245 Dimensions

Readers on

mendeley
393 Mendeley
citeulike
4 CiteULike
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Title
Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat
Published in
BMC Plant Biology, January 2012
DOI 10.1186/1471-2229-12-14
Pubmed ID
Authors

Martin Trick, Nikolai Maria Adamski, Sarah G Mugford, Cong-Cong Jiang, Melanie Febrer, Cristobal Uauy

Abstract

Next generation sequencing (NGS) technologies are providing new ways to accelerate fine-mapping and gene isolation in many species. To date, the majority of these efforts have focused on diploid organisms with readily available whole genome sequence information. In this study, as a proof of concept, we tested the use of NGS for SNP discovery in tetraploid wheat lines differing for the previously cloned grain protein content (GPC) gene GPC-B1. Bulked segregant analysis (BSA) was used to define a subset of putative SNPs within the candidate gene region, which were then used to fine-map GPC-B1.

X Demographics

X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 393 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 5 1%
China 4 1%
Argentina 3 <1%
France 2 <1%
Italy 2 <1%
Sweden 2 <1%
Brazil 2 <1%
India 2 <1%
Japan 2 <1%
Other 11 3%
Unknown 358 91%

Demographic breakdown

Readers by professional status Count As %
Researcher 111 28%
Student > Ph. D. Student 110 28%
Student > Master 51 13%
Student > Postgraduate 15 4%
Student > Bachelor 15 4%
Other 53 13%
Unknown 38 10%
Readers by discipline Count As %
Agricultural and Biological Sciences 284 72%
Biochemistry, Genetics and Molecular Biology 38 10%
Computer Science 7 2%
Environmental Science 5 1%
Engineering 4 1%
Other 12 3%
Unknown 43 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 16. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 25 April 2012.
All research outputs
#1,938,465
of 22,662,201 outputs
Outputs from BMC Plant Biology
#86
of 3,205 outputs
Outputs of similar age
#15,608
of 246,248 outputs
Outputs of similar age from BMC Plant Biology
#2
of 44 outputs
Altmetric has tracked 22,662,201 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 91st percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 3,205 research outputs from this source. They receive a mean Attention Score of 3.0. This one has done particularly well, scoring higher than 97% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 246,248 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 93% of its contemporaries.
We're also able to compare this research output to 44 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 95% of its contemporaries.