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Accelerating large-scale protein structure alignments with graphics processing units

Overview of attention for article published in BMC Research Notes, February 2012
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Title
Accelerating large-scale protein structure alignments with graphics processing units
Published in
BMC Research Notes, February 2012
DOI 10.1186/1756-0500-5-116
Pubmed ID
Authors

Bin Pang, Nan Zhao, Michela Becchi, Dmitry Korkin, Chi-Ren Shyu

Abstract

Large-scale protein structure alignment, an indispensable tool to structural bioinformatics, poses a tremendous challenge on computational resources. To ensure structure alignment accuracy and efficiency, efforts have been made to parallelize traditional alignment algorithms in grid environments. However, these solutions are costly and of limited accessibility. Others trade alignment quality for speedup by using high-level characteristics of structure fragments for structure comparisons.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 22 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Finland 1 5%
Spain 1 5%
United States 1 5%
Norway 1 5%
Unknown 18 82%

Demographic breakdown

Readers by professional status Count As %
Researcher 9 41%
Student > Bachelor 4 18%
Professor > Associate Professor 3 14%
Student > Postgraduate 2 9%
Student > Master 1 5%
Other 3 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 5 23%
Biochemistry, Genetics and Molecular Biology 5 23%
Computer Science 3 14%
Engineering 3 14%
Social Sciences 1 5%
Other 3 14%
Unknown 2 9%