↓ Skip to main content

Is EC class predictable from reaction mechanism?

Overview of attention for article published in BMC Bioinformatics, April 2012
Altmetric Badge

Citations

dimensions_citation
17 Dimensions

Readers on

mendeley
56 Mendeley
citeulike
5 CiteULike
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Title
Is EC class predictable from reaction mechanism?
Published in
BMC Bioinformatics, April 2012
DOI 10.1186/1471-2105-13-60
Pubmed ID
Authors

Neetika Nath, John BO Mitchell

Abstract

We investigate the relationships between the EC (Enzyme Commission) class, the associated chemical reaction, and the reaction mechanism by building predictive models using Support Vector Machine (SVM), Random Forest (RF) and k-Nearest Neighbours (kNN). We consider two ways of encoding the reaction mechanism in descriptors, and also three approaches that encode only the overall chemical reaction. Both cross-validation and also an external test set are used.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 56 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
India 3 5%
United Kingdom 2 4%
Brazil 1 2%
France 1 2%
Austria 1 2%
Thailand 1 2%
Unknown 47 84%

Demographic breakdown

Readers by professional status Count As %
Researcher 21 38%
Student > Ph. D. Student 6 11%
Student > Master 6 11%
Professor > Associate Professor 5 9%
Student > Bachelor 5 9%
Other 12 21%
Unknown 1 2%
Readers by discipline Count As %
Agricultural and Biological Sciences 13 23%
Biochemistry, Genetics and Molecular Biology 8 14%
Computer Science 8 14%
Chemistry 6 11%
Medicine and Dentistry 5 9%
Other 9 16%
Unknown 7 13%