Title |
MASiVEdb: the Sirevirus Plant Retrotransposon Database
|
---|---|
Published in |
BMC Genomics, January 2012
|
DOI | 10.1186/1471-2164-13-158 |
Pubmed ID | |
Authors |
Alexandros Bousios, Evangelia Minga, Nikoleta Kalitsou, Maria Pantermali, Aphrodite Tsaballa, Nikos Darzentas |
Abstract |
Sireviruses are an ancient genus of the Copia superfamily of LTR retrotransposons, and the only one that has exclusively proliferated within plant genomes. Based on experimental data and phylogenetic analyses, Sireviruses have successfully infiltrated many branches of the plant kingdom, extensively colonizing the genomes of grass species. Notably, it was recently shown that they have been a major force in the make-up and evolution of the maize genome, where they currently occupy ~21% of the nuclear content and ~90% of the Copia population. It is highly likely, therefore, that their life dynamics have been fundamental in the genome composition and organization of a plethora of plant hosts. To assist studies into their impact on plant genome evolution and also facilitate accurate identification and annotation of transposable elements in sequencing projects, we developed MASiVEdb (Mapping and Analysis of SireVirus Elements Database), a collective and systematic resource of Sireviruses in plants. |
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