4/7 In this paper we utilise two of the latest bioinformatic tools (EDTA & DeepTE) to generate a Corydoras-specific TE library, and test this pipeline on both (I) PacBio whole genome assemblies (ii) whole transcriptomic data https://t.co/HqEA7n6wp6
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@sciencegurlz0 No. You can do a transcriptome assembly de novo and annotate the transposons afterwards. Back in my day I used RepeatMasker but there are plenty of other tools now. https://t.co/CDxATWO2UT
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@madhubioinfo @Kokkoris_Vas https://t.co/un9WdMYK3t worth taking a look at EDTA and newest RepeatModeler2
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Enjoyed the inclusiveness of this paper on the TE topic https://t.co/tHmtWFDJO6