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@bvhalldorsson @BenedictPaten @jltsiren @jeizenga @amnovak @glenn_hickey @acarroll_ATG @pichuan @erikgarrison Definitely, GraphTyper2 was not out yet when we submitted the benchmark paper https://t.co/BMRTz3VEng but it's on our list now. Would also love to
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@RyanLCollins13 @rajivmccoy @DrGeneUK @1000genomes @nygenome We used the NYGC high-coverage WGS. The recall for graph genotyping of SVs is definitely better when you have better coverage, although hypothetically anything above 10X or so is probably fine:
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RT @MColebrook: #Genotyping structural #variants in #pangenome #graphs using the vg toolkit https://t.co/XcBnOF9KLP #Genomics #Bioinformati…