Title |
PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools
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Published in |
BMC Bioinformatics, May 2012
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DOI | 10.1186/1471-2105-13-115 |
Pubmed ID | |
Authors |
Sean O'Callaghan, David P De Souza, Andrew Isaac, Qiao Wang, Luke Hodkinson, Moshe Olshansky, Tim Erwin, Bill Appelbe, Dedreia L Tull, Ute Roessner, Antony Bacic, Malcolm J McConville, Vladimir A Likić |
Abstract |
Gas chromatography-mass spectrometry (GC-MS) is a technique frequently used in targeted and non-targeted measurements of metabolites. Most existing software tools for processing of raw instrument GC-MS data tightly integrate data processing methods with graphical user interface facilitating interactive data processing. While interactive processing remains critically important in GC-MS applications, high-throughput studies increasingly dictate the need for command line tools, suitable for scripting of high-throughput, customized processing pipelines. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 2 | 67% |
Unknown | 1 | 33% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 3 | 100% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Russia | 2 | <1% |
United States | 2 | <1% |
Australia | 2 | <1% |
Brazil | 1 | <1% |
United Kingdom | 1 | <1% |
Germany | 1 | <1% |
Denmark | 1 | <1% |
Switzerland | 1 | <1% |
Spain | 1 | <1% |
Other | 1 | <1% |
Unknown | 200 | 94% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 52 | 24% |
Student > Ph. D. Student | 49 | 23% |
Student > Master | 20 | 9% |
Student > Bachelor | 12 | 6% |
Other | 11 | 5% |
Other | 28 | 13% |
Unknown | 41 | 19% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 50 | 23% |
Chemistry | 39 | 18% |
Biochemistry, Genetics and Molecular Biology | 19 | 9% |
Computer Science | 14 | 7% |
Engineering | 14 | 7% |
Other | 34 | 16% |
Unknown | 43 | 20% |