Title |
CytoITMprobe: a network information flow plugin for Cytoscape
|
---|---|
Published in |
BMC Research Notes, May 2012
|
DOI | 10.1186/1756-0500-5-237 |
Pubmed ID | |
Authors |
Aleksandar Stojmirović, Alexander Bliskovsky, Yi-Kuo Yu |
Abstract |
Cytoscape is a well-developed flexible platform for visualization, integration and analysis of network data. Apart from the sophisticated graph layout and visualization routines, it hosts numerous user-developed plugins that significantly extend its core functionality. Earlier, we developed a network information flow framework and implemented it as a web application, called ITM Probe. Given a context consisting of one or more user-selected nodes, ITM Probe retrieves other network nodes most related to that context. It requires neither user restriction to subnetwork of interest nor additional and possibly noisy information. However, plugins for Cytoscape with these features do not yet exist. To provide the Cytoscape users the possibility of integrating ITM Probe into their workflows, we developed CytoITMprobe, a new Cytoscape plugin. |
X Demographics
Geographical breakdown
Country | Count | As % |
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France | 1 | 50% |
Unknown | 1 | 50% |
Demographic breakdown
Type | Count | As % |
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Scientists | 1 | 50% |
Members of the public | 1 | 50% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
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Hungary | 2 | 9% |
United States | 2 | 9% |
Italy | 1 | 5% |
Unknown | 17 | 77% |
Demographic breakdown
Readers by professional status | Count | As % |
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Researcher | 5 | 23% |
Student > Ph. D. Student | 5 | 23% |
Other | 3 | 14% |
Student > Bachelor | 2 | 9% |
Professor > Associate Professor | 2 | 9% |
Other | 2 | 9% |
Unknown | 3 | 14% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 10 | 45% |
Biochemistry, Genetics and Molecular Biology | 5 | 23% |
Computer Science | 2 | 9% |
Medicine and Dentistry | 1 | 5% |
Unknown | 4 | 18% |