Review by Mihaela Pertea
In this revised version of the manuscript the authors present a better explanation of their algoirthm and make a more thorough evaluation of their approach by including one real data set, and a…
In this revised version of the manuscript the authors present a better explanation of their algoirthm and make a more thorough evaluation of their approach by including one real data set, and a…
I only have a few comments on the revised version: 1. It should be indicated which assembly was used as "truth" in the evaluation on real data (N2/CB), e.g. to compute the error counts for Table 3. …
In this paper the authors introduce a new scaffolder - AGOUTI - that uses RNA-seq data to improve assembly as well as gene annotations. This is a useful tool that will help the scientific community…
Zhang et al. describe a new program for using RNA-seq data to scaffold genome assemblies. The manuscript is nicely written and the program seems to perform well. My only major concern is that the…