@anshulkundaje How do you feel about PAGA? https://t.co/FrrZmIbrk5 I like the flexibility of the representation (e.g. no imposition of a tree topology, or even connectness).
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This allowed the application of lineage reconstruction tools. Instead of “tracing” these “reconstruct” trajectories. These tools will be very useful, especially in the vast majority of animals with no well developed transgenesis tools. https://t.co/4MiPCwE
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Gephiなる可視化ソフトのアルゴリズムみたいだけど、Python用にも設計されてる どっちで描画したんだろ? https://t.co/ykz34HV0zJ https://t.co/2RVToIYEU5
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@AlbertVilella @satijalab @LGMartelotto @hoheyn Finally couple other methods (again not comprehensive): TSCAN https://t.co/0jrrIdUX8b slingshot: https://t.co/bl4ijonQ8w SLICE: https://t.co/hvcrpfvcj8 PAGA: https://t.co/4BNbMtlOg0